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EST Pre-processing
EST Clustering and Assembly
ORF prediction and EST Translation
EST Data resources
EST analysis Pipelines
EST Applications
Miscellaneous
EST applications and visualization resources
Description
Comments
Free for academic users
GBA server
EST-based digital gene expression profiling
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ESTminer
Gene and allele identification
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prot4EST
Protein multiple sequence alignments from EST
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galaxieEST
Automated phylogenetic analysis of ESTs
√ W
For Gene Structure prediction and Alternative Splicing
Description
Comments
Free for academic users
Transcript Assembly Program
An EST-based gene finder that infers the predominant and alternative gene structures in anonymous genomic sequences.
√ W
GeneSeqer
To identify Alternative Splicing events
√ W
For SNP Discovery
Description
Comments
Free for academic users
SNP discovery from ESTs
To find SNP candidates in an EST CAP3 assembly
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miraEST
SNP discovery from ESTsin Humans
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Visualization Tools
Description
Comments
Free for academic users
SpliceNest
Visualizing Splicing of Genes from EST Data
√ W
JESAM
CORBA software components to create and publish EST alignments and clusters
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W:Web Interface available