Home
EST Pre-processing
EST Clustering and Assembly
ORF prediction and EST Translation
EST Data resources
EST analysis Pipelines
EST Applications
Miscellaneous
Useful web Resources for EST pre-processing
Databases
Description
Free for academic users
Comments
UniVec
√
Vector database
EMVec
√
Vector database
The TIGR Plant Repeat Databases
√
Plant Repeat Sequences
Vector cleaning
X
Commercial Packages
Available Tools
Description
Free for academic users
Comments
Phred /Crossmatch
√
Basecaller/Vector trimming and removal
Dust
√
Program for filtering low complexity regions
Lucy2
√
Sequence trimming and visualization tool
VecScreen
√
Tool for identifying segments of a nucleic acid sequence that may be of vector, linker, or adapter
Trimest, Trimseq and Vectorstrip
√
EMBOSS Packages
SeqClean
√
Script
RepeatMasker
√
Repeat masking tool
MaskerAid
√
Repeat masking tool